Package net.sf.cram.structure

Examples of net.sf.cram.structure.SubstitutionMatrix$SubCode

424
425
426
427
428
429
430
431
432
433
434
                byte base = s.getBase();
                freqs[refBase][base]++;
              }
        }

        h.substitutionMatrix = new SubstitutionMatrix(freqs);
      } else h.substitutionMatrix = substitutionMatrix ;

      HuffmanParamsCalculator calculator = new HuffmanParamsCalculator();
      for (CramRecord r : records)
        if (r.getReadFeatures() == null)
View Full Code Here
TOP

Related Classes of net.sf.cram.structure.SubstitutionMatrix$SubCode

  • net.sf.cram.stats.CompressionHeaderFactory
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.