Package htsjdk.variant.vcf

Examples of htsjdk.variant.vcf.VCFRecordCodec


        // NB: The default MAX_RECORDS_IN_RAM may not be appropriate here. VariantContexts are smaller than SamRecords
        // We would have to play around empirically to find an appropriate value. We are not performing this optimization at this time.
        final SortingCollection<VariantContext> sorter =
                SortingCollection.newInstance(
                        VariantContext.class,
                        new VCFRecordCodec(outputHeader),
                        outputHeader.getVCFRecordComparator(),
                        MAX_RECORDS_IN_RAM,
                        TMP_DIR);
        int readerCount = 1;
        for (final VCFFileReader reader : readers) {
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Related Classes of htsjdk.variant.vcf.VCFRecordCodec

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