Package fork.lib.bio.anno.id

Examples of fork.lib.bio.anno.id.CrossAnno


   
   
protected void init() throws Exception{
    gb= new BedReader(file).getGenomicRegionsBuilder();
   
    CrossAnno cr= new CrossAnno(link,0,1);
    Iterator<GenomicRegion> it = gb.iterator();
    while(it.hasNext()){
        GenomicRegion gr= it.next();
        String n= gr.attr.toString();
        String nn= cr.map(n);
        if(nn==null){
            nn= n;
        }
        gr.attr= new Object[]{n, nn};
    }
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