Package eu.planets_project.ifr.core.wee.api.workflow

Examples of eu.planets_project.ifr.core.wee.api.workflow.WorkflowResult

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        //set status for the workflow inISRUNNING
      weeManager.notify(uuid,WorkflowExecutionStatus.RUNNING);

        //3) executeWorkflow and get WF Result
      WorkflowResult ret = wf.initializeExecution();
      try {
        log.debug("WorkflowExecutionEngine: start executing wf ID: " + wf.getWorkflowID());
       
        //EXECUTES THE WF INSTANCE
      List<DigitalObject> payload = wf.getData();
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  /* (non-Javadoc)
   * @see eu.planets_project.ifr.core.wee.api.workflow.WorkflowTemplate#execute()
   */
  public WorkflowResult execute(){
   
    WorkflowResult wfResult = null;
    int count = 0;
    for(DigitalObject dgo : this.getData()){
     
      try{
        //run identification service one
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     */
    public WorkflowResult execute() {
        /* We want fresh logs and report for every run: */
        log = initLog();
        log.warn("Starting EXECUTE");
        WorkflowResult wfResult = null;
        int count = 0;
        List<DigitalObject> objects = new ArrayList<DigitalObject>();
        log.trace(WorkflowTemplateHelper.overview(this));
        String metadata;
        DigitalObject tmpDo;
        try {
            for (DigitalObject dgo : this.getData()) {
                metadata = null;
                tmpDo = dgo;
                log.info("Processing file #" + (count + 1));
                try {
                 
                    // Identify
                    String[] types = runIdentification(dgo, wfResult);
                    log.info(new Message("Identification", new Parameter("File", dgo.getTitle()), new Parameter(
                            "Result", Arrays.asList(types).toString())));

                    // Extract metadata - will otherwise get lost between steps!
                    List<Metadata> mList = dgo.getMetadata();

                    if ((mList != null) && (mList.size() > 0)) {
                        metadata = mList.get(0).getContent();
                    }

                    if (metadata == null) {
                        log.warn("No metadata contained in DigitalObject!");
                    } else {
                        log.info("Extracted metadata: " + metadata);
                    }
                   
                    // Migrate
                    try {
                        FormatRegistry fr = FormatRegistryFactory.getFormatRegistry();
                        String ext = fr.getFirstExtension(new URI(types[0]));
                        log.info("Getting extension: " + ext);
                        if (ext != null) {
                            dgo = runMigrateService(dgo, fr.createExtensionUri(ext), wfResult);
                            dgo = new DigitalObject.Builder(dgo.getContent())
                                .title(tmpDo.getTitle().substring(0, tmpDo.getTitle().lastIndexOf(".")))
                                .build();
                            objects.add(dgo);
                            log.info(new Message("Migration", new Parameter("Input", ext), new Parameter("Result", dgo
                                    .getTitle())));
                        }
                    } catch (URISyntaxException e) {
                        throw new RuntimeException(e);
                    }
                } catch (Exception e) {
                    log.error("workflow execution error for digitalObject #" + count);
                    log.error(e.getClass() + ": " + e.getMessage());
                    System.out.println(e);
                }
                count++;
            }
        } finally {
            /* A final message: */
            List<URL> results = WorkflowTemplateHelper.reference(objects, log.getOutputFolder());
            log.trace(WorkflowTemplateHelper.link(results));
            /* Now write the stuff to disk: */
            File reportFile = log.reportAsFile();
            File logFile = log.logAsFile();
            System.out.println("Wrote report to: " + reportFile.getAbsolutePath());
            /* And return a result object: */
            try {
                //URL reportURL = reportFile.toURL();
                String outFolder = "http://"+"127.0.0.1"+":80/data/wee/id-"+log.getTime();
                URL reportURL = new URL(outFolder+"/wf-report.html");
                wfResult = new WorkflowResult(reportURL, logFile.toURL(), results);
                System.out.println("Workflow result: " + wfResult);
                return wfResult;
            } catch (MalformedURLException e) {
                e.printStackTrace();
            }
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     * eu.planets_project.ifr.core.wee.api.workflow.WorkflowTemplate#execute()
     */
    public WorkflowResult execute() {
        /* We want fresh logs and report for every run: */
        log = initLog();
        WorkflowResult wfResult = new WorkflowResult();
        int count = 0;
        List<DigitalObject> objects = new ArrayList<DigitalObject>();
        log.trace(WorkflowTemplateHelper.overview(this));
        String metadata;
        try {
            for (DigitalObject dgo : this.getData()) {
                metadata = null;
                log.info("Processing file #" + (count + 1));
                try {
                    // Identify
                    String[] types = runIdentification(dgo, wfResult);
                    log.info(new Message("Identification", new Parameter("File", dgo.getTitle()), new Parameter(
                            "Result", Arrays.asList(types).toString())));

                    // Extract metadata - will otherwise get lost between steps!
                    List<Metadata> mList = dgo.getMetadata();
                    if ((mList != null) && (mList.size() > 0)) {
                        metadata = mList.get(0).getContent();
                    }

                    if (metadata == null) {
                        log.warn("No metadata contained in DigitalObject!");
                    } else {
                        log.info("Extracted metadata: " + metadata);
                    }
                   
                    // Migrate
                    try {
                        FormatRegistry fr = FormatRegistryFactory.getFormatRegistry();
                        String ext = fr.getFirstExtension(new URI(types[0]));
                        log.info("Getting extension: " + ext);
                        if (ext != null) {
                            dgo = runMigrateService(dgo, fr.createExtensionUri(ext), wfResult);
                            objects.add(dgo);
                            log.info(new Message("Migration", new Parameter("Input", ext), new Parameter("Result", dgo
                                    .getTitle())));
                        }
                    } catch (URISyntaxException e) {
                        throw new RuntimeException(e);
                    }
                } catch (Exception e) {
                  String err = "workflow execution error for digitalObject #" + count;
                    log.error(err);
                    log.error(e.getClass() + ": " + e.getMessage());
                    System.out.println(e);
                    WorkflowResultItem wfResultItem = new WorkflowResultItem(dgo.getPermanentUri(),
                        WorkflowResultItem.GENERAL_WORKFLOW_ACTION,
                        System.currentTimeMillis());
                    wfResultItem.addLogInfo(err);
                    wfResult.addWorkflowResultItem(wfResultItem);
                }
                count++;
            }
        } finally {
          //document endTime of the workflow
          wfResult.setEndTime(System.currentTimeMillis());
         
            /* A final message: */
            List<URL> results = WorkflowTemplateHelper.reference(objects, log.getOutputFolder());
            log.trace(WorkflowTemplateHelper.link(results));
            /* Now write the stuff to disk: */
            File reportFile = log.reportAsFile();
            File logFile = log.logAsFile();
            System.out.println("Wrote report to: " + reportFile.getAbsolutePath());
            /* And return a result object: */
            try {
              URI outFolder = new URI("http",this.getHostAuthority(),"/data/wee/id-"+log.getTime(),null,null);
        //String outFolder = "http://"+getHostName()+"/data/wee/id-"+log.getTime();
              URL reportURL = new URL(""+outFolder+"/wf-report.html");
              URL logFileURL = new URL(""+outFolder+"/wf-log.txt");
              //wfResult = new WorkflowResult(reportURL, logFile.toURL(), results);          
             
              wfResult.setReport(reportURL);
                wfResult.setLog(logFileURL);
                wfResult.setResults(results);
               
              System.out.println("Workflow result: " + wfResult);
                return wfResult;
            } catch (MalformedURLException e) {
                e.printStackTrace();
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     * eu.planets_project.ifr.core.wee.api.workflow.WorkflowTemplate#execute()
     */
    public WorkflowResult execute() {
        /* We want fresh logs and report for every run: */
        log = initLog();
        WorkflowResult wfResult = null;
        int count = 0;
        List<DigitalObject> objects = new ArrayList<DigitalObject>();
        log.trace(WorkflowTemplateHelper.overview(this));
        String metadata;
        try {
            for (DigitalObject dgo : this.getData()) {
                metadata = null;
                log.info("Processing file #" + (count + 1));
                try {
                   
                    // Migrate
                    try {
                        String ext = dgo.getTitle().substring(dgo.getTitle().lastIndexOf('.')+1, dgo.getTitle().length());
                        log.info("detected extension: "+ext);
                       
                        FormatRegistry fr = FormatRegistryFactory.getFormatRegistry();
                        //String ext = fr.getFirstExtension(new URI(types[0]));
                        log.info("Getting extension: " + ext);
                        if (ext != null) {
                            DigitalObject dgoOut = runMigrateService(dgo, fr.createExtensionUri(ext), wfResult);
                           
                            objects.add(dgoOut);
                            log.info(new Message("Migration", new Parameter("Input", ext), new Parameter("Result", dgo
                                    .getTitle())));
                        }
                    } catch (URISyntaxException e) {
                        throw new RuntimeException(e);
                    }
                } catch (Exception e) {
                    log.error("workflow execution error for digitalObject #" + count);
                    log.error(e.getClass() + ": " + e.getMessage());
                    System.out.println(e);
                }
                count++;
            }
        } finally {
             /* A final message: */
            List<URL> results = WorkflowTemplateHelper.reference(objects, log.getOutputFolder());
            log.trace(WorkflowTemplateHelper.link(results));
            /* Now write the stuff to disk: */
            File reportFile = log.reportAsFile();
            File logFile = log.logAsFile();
            System.out.println("Wrote report to: " + reportFile.getAbsolutePath());
            /* And return a result object: */
            try {
                //URL reportURL = reportFile.toURL();
                String outFolder = "http://"+this.getHostName()+":80/data/wee/id-"+log.getTime();
                URL reportURL = new URL(outFolder+"/wf-report.html");
                wfResult = new WorkflowResult(reportURL, logFile.toURL(), results);
                System.out.println("Workflow result: " + wfResult);
                return wfResult;
            } catch (MalformedURLException e) {
                e.printStackTrace();
            }
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     * eu.planets_project.ifr.core.wee.api.workflow.WorkflowTemplate#execute()
     */
    @SuppressWarnings("finally")
  public WorkflowResult execute() {
      //init the log...
        wfResult = new WorkflowResult();
        int count = 0;
        try {
          //get the digital objects and iterate one by one
            for (DigitalObject dgoA : this.getData()) {
             
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     */
    public WorkflowResult execute() {
        /* We want fresh logs and report for every run: */
        log = initLog();
        log.warn("Starting EXECUTE");
        WorkflowResult wfResult = null;
        int count = 0;
        List<DigitalObject> objects = new ArrayList<DigitalObject>();
        log.trace(WorkflowTemplateHelper.overview(this));
        String metadata;
        String title;  //used to note a file name
        try {
            for (DigitalObject dgo : this.getData()) {
                metadata = null;
                title = null;
                log.info("Processing file #" + (count + 1));
                try {
                    // Identify
                    String[] types = runIdentification(dgo, wfResult);
                    log.info(new Message("Identification", new Parameter("File", dgo.getTitle()), new Parameter(
                            "Result", Arrays.asList(types).toString())));

                    // Extract metadata - will otherwise get lost between steps!
                    List<Metadata> mList = dgo.getMetadata();

                    if ((mList != null) && (mList.size() > 0)) {
                        metadata = mList.get(0).getContent();
                    }

                    if (metadata == null) {
                        log.warn("No metadata contained in DigitalObject!");
                        log.info("Add title: " + dgo.getTitle());
                        title = dgo.getTitle();
                        if(title.contains("."))
                        {
                          title = title.substring(0, title.lastIndexOf("."));
                        }
                        URI myMigrateToURI =
                              this.getServiceCallConfigs(this.migrate).getPropertyAsURI(SER_PARAM_MIGRATE_TO);
                        String newExtension =
                              FormatRegistryFactory.getFormatRegistry().getFirstExtension(myMigrateToURI);
                        title = title + "." + newExtension;
                    } else {
                        log.info("Extracted metadata: " + metadata);
                    }
                   
                    // Migrate
                    try {
                        FormatRegistry fr = FormatRegistryFactory.getFormatRegistry();
                        String ext = fr.getFirstExtension(new URI(types[0]));
                        log.info("Getting extension: " + ext);
                        if (ext != null) {
                            dgo = runMigrateService(dgo, fr.createExtensionUri(ext), wfResult);
                            dgo = new DigitalObject.Builder(dgo.getContent())
                                .title(title)
                                .build();
                            objects.add(dgo);
                            log.info(new Message("Migration", new Parameter("Input", ext), new Parameter("Result", dgo
                                    .getTitle())));
                        }
                    } catch (URISyntaxException e) {
                        throw new RuntimeException(e);
                    }
                } catch (Exception e) {
                    log.error("workflow execution error for digitalObject #" + count);
                    log.error(e.getClass() + ": " + e.getMessage());
                    System.out.println(e);
                }
                count++;
            }
        } finally {
            /* A final message: */
            List<URL> results = WorkflowTemplateHelper.reference(objects, log.getOutputFolder());
            log.trace(WorkflowTemplateHelper.link(results));
            /* Now write the stuff to disk: */
            File reportFile = log.reportAsFile();
            File logFile = log.logAsFile();
            System.out.println("Wrote report to: " + reportFile.getAbsolutePath());
            /* And return a result object: */
            try {
                //URL reportURL = reportFile.toURL();
                String outFolder = "http://"+"127.0.0.1"+":80/data/wee/id-"+log.getTime();
                URL reportURL = new URL(outFolder+"/wf-report.html");
                wfResult = new WorkflowResult(reportURL, logFile.toURL(), results);
                System.out.println("Workflow result: " + wfResult);
                return wfResult;
            } catch (MalformedURLException e) {
                e.printStackTrace();
            }
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     * eu.planets_project.ifr.core.wee.api.workflow.WorkflowTemplate#execute()
     */
    public WorkflowResult execute() {
        /* We want fresh logs and report for every run: */
        log = initLog();
        WorkflowResult wfResult = null;
        int count = 0;
        List<DigitalObject> objects = new ArrayList<DigitalObject>();
        log.trace(WorkflowTemplateHelper.overview(this));
        String metadata;
        try {
            for (DigitalObject dgo : this.getData()) {
                metadata = null;
                log.info("Processing file #" + (count + 1));
                try {
                   
                    // Migrate
                    try {
                        String ext = dgo.getTitle().substring(dgo.getTitle().lastIndexOf('.')+1, dgo.getTitle().length());
                        log.info("detected extension: "+ext);
                       
                        FormatRegistry fr = FormatRegistryFactory.getFormatRegistry();
                        //String ext = fr.getFirstExtension(new URI(types[0]));
                        log.info("Getting extension: " + ext);
                        if (ext != null) {
                            DigitalObject dgoOut = runMigrateService(dgo, fr.createExtensionUri(ext), wfResult);
                           
                            objects.add(dgoOut);
                            log.info(new Message("Migration", new Parameter("Input", ext), new Parameter("Result", dgo
                                    .getTitle())));
                        }
                    } catch (URISyntaxException e) {
                        throw new RuntimeException(e);
                    }
                } catch (Exception e) {
                    log.error("workflow execution error for digitalObject #" + count);
                    log.error(e.getClass() + ": " + e.getMessage());
                    System.out.println(e);
                }
                count++;
            }
        } finally {
             /* A final message: */
            List<URL> results = WorkflowTemplateHelper.reference(objects, log.getOutputFolder());
            log.trace(WorkflowTemplateHelper.link(results));
            /* Now write the stuff to disk: */
            File reportFile = log.reportAsFile();
            File logFile = log.logAsFile();
            System.out.println("Wrote report to: " + reportFile.getAbsolutePath());
            /* And return a result object: */
            try {
                //URL reportURL = reportFile.toURL();
                String outFolder = "http://"+this.getHostName()+":80/data/wee/id-"+log.getTime();
                URL reportURL = new URL(outFolder+"/wf-report.html");
                wfResult = new WorkflowResult(reportURL, logFile.toURL(), results);
                System.out.println("Workflow result: " + wfResult);
                return wfResult;
            } catch (MalformedURLException e) {
                e.printStackTrace();
            }
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  /* (non-Javadoc)
   * @see eu.planets_project.ifr.core.wee.api.workflow.WorkflowTemplate#execute()
   */
  public WorkflowResult execute(){
   
    WorkflowResult wfResult = null;
    int count = 0;
    for(DigitalObject dgo : this.getData()){
      System.out.println("Running job #" + (count + 1));
     
      try{
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     * eu.planets_project.ifr.core.wee.api.workflow.WorkflowTemplate#execute()
     */
    public WorkflowResult execute() {
        /* We want fresh logs and report for every run: */
        log = initLog();
        WorkflowResult wfResult = null;
        int count = 0;
        List<DigitalObject> objects = new ArrayList<DigitalObject>();
        log.trace(WorkflowTemplateHelper.overview(this));
        String metadata;
        try {
            for (DigitalObject dgo : this.getData()) {
                metadata = null;
                log.info("Processing file #" + (count + 1));
                try {
                    // Identify
                    String[] types = runIdentification1(dgo, wfResult);
                    log.info(new Message("Identification", new Parameter("File", dgo.getTitle()), new Parameter(
                            "Result", Arrays.asList(types).toString())));

                    // Extract metadata - will otherwise get lost between steps!
                    List<Metadata> mList = dgo.getMetadata();
                    if ((mList != null) && (mList.size() > 0)) {
                        metadata = mList.get(0).getContent();
                    }

                    if (metadata == null) {
                        log.warn("No metadata contained in DigitalObject!");
                    } else {
                        log.info("Extracted metadata: " + metadata);
                    }
                   
                    // Migrate
                    try {
                        FormatRegistry fr = FormatRegistryFactory.getFormatRegistry();
                        String ext = fr.getFirstExtension(new URI(types[0]));
                        log.info("Getting extension: " + ext);
                        if (ext != null) {
                            dgo = runMigrationService(dgo, fr.createExtensionUri(ext), wfResult);
                            objects.add(dgo);
                            log.info(new Message("Migration", new Parameter("Input", ext), new Parameter("Result", dgo
                                    .getTitle())));
                        }
                    } catch (URISyntaxException e) {
                        throw new RuntimeException(e);
                    }
                   
                    types = runIdentification2(dgo, wfResult);
                    log.info(new Message("Identification2", new Parameter("File", dgo.getTitle()), new Parameter(
                            "Result", Arrays.asList(types).toString())));

                   
                } catch (Exception e) {
                    log.error("workflow execution error for digitalObject #" + count);
                    log.error(e.getClass() + ": " + e.getMessage());
                    System.out.println(e);
                }
                count++;
            }
        } finally {
            /* A final message: */
            List<URL> results = WorkflowTemplateHelper.reference(objects, log.getOutputFolder());
            log.trace(WorkflowTemplateHelper.link(results));
            /* Now write the stuff to disk: */
            File reportFile = log.reportAsFile();
            File logFile = log.logAsFile();
            System.out.println("Wrote report to: " + reportFile.getAbsolutePath());
            /* And return a result object: */
            try {
                //URL reportURL = reportFile.toURL();
                String outFolder = "http://"+this.getHostName()+":80/data/wee/id-"+log.getTime();
                URL reportURL = new URL(outFolder+"/wf-report.html");
                wfResult = new WorkflowResult(reportURL, logFile.toURL(), results);
                System.out.println("Workflow result: " + wfResult);
                return wfResult;
            } catch (MalformedURLException e) {
                e.printStackTrace();
            }
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