Package eu.isas.peptideshaker.followup

Examples of eu.isas.peptideshaker.followup.ProgenesisExcelExport


            new Thread("ProgenesisPsmThread") {
                @Override
                public void run() {
                    try {
                        if (psmSelectionComboBox.getSelectedIndex() == 4) {
                            ProgenesisExcelExport progenesisExcelExport = new ProgenesisExcelExport(
                                    progressDialog,
                                    peptideShakerGUI.getIdentification().getProteinIdentification(),
                                    peptideShakerGUI.getSearchParameters().getEnzyme(),
                                    peptideShakerGUI.getSequenceMatchingPreferences(),
                                    peptideShakerGUI.getIdentification(),
                                    finalOutputFile);
                            progenesisExcelExport.writeProgenesisExcelExport();
                        } else {
                            ProgenesisExport.writeProgenesisExport(finalOutputFile, peptideShakerGUI.getIdentification(),
                                    ProgenesisExport.ExportType.getTypeFromIndex(userChoice), progressDialog, ptmSelection,
                                    peptideShakerGUI.getSequenceMatchingPreferences());
                        }
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