Examples of edu.stanford.bmir.protege.web.shared.search.EntityNameMatcher$MatchIndexHelper

Package edu.stanford.bmir.protege.web.shared.search

Examples of edu.stanford.bmir.protege.web.shared.search.EntityNameMatcher$MatchIndexHelper

edu.stanford.bmir.protege.web.shared.search.EntityNameMatcher
Author: Matthew Horridge
Stanford University
Bio-Medical Informatics Research Group
Date: 13/11/2013
A utility for searching for substrings in entity names. Matches that match whole entity names (quoted or unquoted) will be returned first, then matches that match whole words in entity names, then matches that math word prefixes in entity names, then matches that match substrings in entity names. If the entity name is a prefix name, matches that occur after the prefix name will be found in preferences to possible matches that would occur in the prefix name. For example, given a search string of "bc", and an entity name of "abcBc", the "Bc" substring would be matched over the first "bc" substring. For the same search string and an entity name of "bc:bc", the second occurrence of "bc" would be matched in preference to the first occurrence.


    private List<EntityLookupResult> lookupEntities(final OWLAPIProject project, final EntityLookupRequest entityLookupRequest) {
        final RenderingManager rm = project.getRenderingManager();
        BidirectionalShortFormProvider sfp = rm.getShortFormProvider();
        Set<OWLEntityDataMatch> matches = new TreeSet<OWLEntityDataMatch>();
        EntityNameMatcher matcher = new EntityNameMatcher(entityLookupRequest.getSearchString());
        for(String shortForm : sfp.getShortForms()) {
            Optional<EntityNameMatchResult> result = matcher.findIn(shortForm);
            if(result.isPresent()) {
                Set<OWLEntity> entities = sfp.getEntities(shortForm);
                for(OWLEntity matchingEntity : entities) {
                    Optional<OWLEntityData> match = toOWLEntityData(matchingEntity, entityLookupRequest, rm);
                    if(match.isPresent()) {

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        List<AutoCompletionMatch> matches = Lists.newArrayList();
        Set<EntityType<?>> expectedEntityTypes = Sets.newHashSet(ManchesterSyntaxFrameParser.getExpectedEntityTypes(e));
        if(!expectedEntityTypes.isEmpty()) {
            BidirectionalShortFormProvider shortFormProvider = project.getRenderingManager().getShortFormProvider();
            for(String shortForm : shortFormProvider.getShortForms()) {
                EntityNameMatcher entityNameMatcher = new EntityNameMatcher(lastWordPrefix);
                Optional<EntityNameMatchResult> match = entityNameMatcher.findIn(shortForm);
                if(match.isPresent()) {
                    Set<OWLEntity> entities = shortFormProvider.getEntities(shortForm);
                    for(OWLEntity entity : entities) {
                        if(expectedEntityTypes.contains(entity.getEntityType())) {
                            EscapingShortFormProvider escapingShortFormProvider = new EscapingShortFormProvider(shortFormProvider);

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Related Classes of edu.stanford.bmir.protege.web.shared.search.EntityNameMatcher$MatchIndexHelper

edu.stanford.bmir.protege.web.server.entities.LookupEntitiesActionHandler

edu.stanford.bmir.protege.web.server.frame.GetManchesterSyntaxFrameCompletionsActionHandler

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