Package edu.harvard.hul.ois.mets

Examples of edu.harvard.hul.ois.mets.Div


                mets.getContent().add(fileSec);
            }
           
            // FIXME: Add Structmap here, but it is empty and we won't use it now.
            StructMap structMap = new StructMap();
            Div div = new Div();
            structMap.getContent().add(div);
            mets.getContent().add(structMap);

           
            mets.validate(new MetsValidator());
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                        primaryBitstreamFileID = fileID;

                    // if this is content, add to structmap too:
                    if (isContentBundle)
                    {
                        Div div = new Div();
                        div.setID(gensym("div"));
                        div.setTYPE("DSpace Content Bitstream");
                        Fptr fptr = new Fptr();
                        fptr.setFILEID(fileID);
                        div.getContent().add(fptr);
                        contentDivs.add(div);
                    }

                    file.setSEQ(bitstreams[bits].getSequenceID());
        
                    String groupID = "GROUP_" + xmlIDstart + sid;
        
                    /*
                     * If we're in THUMBNAIL or TEXT bundles, the bitstream is
                     * extracted text or a thumbnail, so we use the name to work
                     * out which bitstream to be in the same group as
                     */
                    if ((bundles[i].getName() != null)
                            && (bundles[i].getName().equals("THUMBNAIL") ||
                                bundles[i].getName().startsWith("TEXT")))
                    {
                        // Try and find the original bitstream, and chuck the
                        // derived bitstream in the same group
                        Bitstream original = findOriginalBitstream(item,
                                bitstreams[bits]);
        
                        if (original != null)
                        {
                            groupID = "GROUP_" + xmlIDstart
                                    + original.getSequenceID();
                        }
                    }
        
                    file.setGROUPID(groupID);
                    file.setMIMETYPE(bitstreams[bits].getFormat().getMIMEType());
        
                    // FIXME: CREATED: no date

                    file.setSIZE(auth ? bitstreams[bits].getSize() : 0);

                    // translate checksum and type to METS, if available.
                    String csType = bitstreams[bits].getChecksumAlgorithm();
                    String cs = bitstreams[bits].getChecksum();
                    if (auth && cs != null && csType != null)
                    {
                        try
                        {
                            file.setCHECKSUMTYPE(Checksumtype.parse(csType));
                            file.setCHECKSUM(cs);
                        }
                        catch (MetsException e)
                        {
                            log.warn("Cannot set bitstream checksum type="+csType+" in METS.");
                        }
                    }
        
                    // FLocat: filename is MD5 checksum
                    FLocat flocat = new FLocat();
                    flocat.setLOCTYPE(Loctype.URL);
                    flocat.setXlinkHref(makeBitstreamName(bitstreams[bits]));

                    // Make bitstream techMD metadata, add to file.
                    String techID = "techMd_for_bitstream_"+bitstreams[bits].getSequenceID();
                    AmdSec fAmdSec = new AmdSec();
                    fAmdSec.setID(techID);
                    TechMD techMd = new TechMD();
                    techMd.setID(gensym("tech"));
                    MdWrap mdWrap = new MdWrap();
                    setMdType(mdWrap, metsName);
                    XmlData xmlData = new XmlData();
                    mdWrap.getContent().add(xmlData);
                    techMd.getContent().add(mdWrap);
                    fAmdSec.getContent().add(techMd);
                    mets.getContent().add(fAmdSec);
                    crosswalkToMets(xwalk, bitstreams[bits], xmlData);
                    file.setADMID(techID);

                    // Add FLocat to File, and File to FileGrp
                    file.getContent().add(flocat);
                    fileGrp.getContent().add(file);
                }
        
                // Add fileGrp to fileSec
                fileSec.getContent().add(fileGrp);
            }
        
            // Add fileSec to document
            mets.getContent().add(fileSec);
        
            // Create simple structMap: initial div represents the Item,
            // and user-visible content bitstreams are in its child divs.
            StringBuffer dmdIds = new StringBuffer();
            for (int i = 0; i < dmdId.length; ++i)
                dmdIds.append(" "+dmdId[i]);
            StructMap structMap = new StructMap();
            structMap.setID(gensym("struct"));
            structMap.setTYPE("LOGICAL");
            structMap.setLABEL("DSpace");
            Div div0 = new Div();
            div0.setID(gensym("div"));
            div0.setTYPE("DSpace Item");
            div0.setDMDID(dmdIds.substring(1));
            if (licenseID != null)
                div0.setADMID(licenseID);

            // if there is a primary bitstream, add FPTR to it.
            if (primaryBitstreamFileID != null)
            {
                Fptr fptr = new Fptr();
                fptr.setFILEID(primaryBitstreamFileID);
                div0.getContent().add(fptr);
            }

            // add DIV for each content bitstream
            div0.getContent().addAll(contentDivs);

            structMap.getContent().add(div0);

            // Does subclass have something to add to structMap?
            addStructMap(context, item, params, mets);
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        // Collection's members, or Community's members.
        StructMap structMap = new StructMap();
        structMap.setID(gensym("struct"));
        structMap.setTYPE("LOGICAL");
        structMap.setLABEL("DSpace Object");
        Div div0 = new Div();
        div0.setID(gensym("div"));
        div0.setTYPE("DSpace Object Contents");
        structMap.getContent().add(div0);

        // fileSec is optional, let object type create it if needed.
        FileSec fileSec = null;

        // Item-specific manifest - license, bitstreams as Files, etc.
        if (dso.getType() == Constants.ITEM)
        {
            // this tags file ID and group identifiers for bitstreams.
            String bitstreamIDstart = "bitstream_";
            Item item = (Item)dso;

            // how to handle unauthorized bundle/bitstream:
            String unauth = (params == null) ? null : params.getProperty("unauthorized");

            // fileSec - all non-metadata bundles go into fileGrp,
            // and each bitstream therein into a file.
            // Create the bitstream-level techMd and div's for structmap
            // at the same time so we can connect the IDREFs to IDs.
            fileSec = new FileSec();
            Bundle[] bundles = item.getBundles();
            for (int i = 0; i < bundles.length; i++)
            {
                if (!includeBundle(bundles[i]))
                {
                    continue;
                }

                // unauthorized bundle?
                // NOTE: This must match the logic in disseminate()
                if (!AuthorizeManager.authorizeActionBoolean(context,
                            bundles[i], Constants.READ))
                {
                    if (unauth != null &&
                        (unauth.equalsIgnoreCase("skip")))
                    {
                        continue;
                    }
                    else
                    {
                        throw new AuthorizeException("Not authorized to read Bundle named \"" + bundles[i].getName() + "\"");
                    }
                }

                Bitstream[] bitstreams = bundles[i].getBitstreams();

                // Create a fileGrp, USE = permuted Bundle name
                FileGrp fileGrp = new FileGrp();
                String bName = bundles[i].getName();
                if ((bName != null) && !bName.equals(""))
                {
                    fileGrp.setUSE(bundleToFileGrp(bName));
                }

                // add technical metadata for a bundle
                String techBundID = addAmdSec(context, bundles[i], params, mets, extraStreams);
                if (techBundID != null)
                {
                    fileGrp.setADMID(techBundID);
                }

                // watch for primary bitstream
                int primaryBitstreamID = -1;
                boolean isContentBundle = false;
                if ((bName != null) && bName.equals("ORIGINAL"))
                {
                    isContentBundle = true;
                    primaryBitstreamID = bundles[i].getPrimaryBitstreamID();
                }

                // For each bitstream, add to METS manifest
                for (int bits = 0; bits < bitstreams.length; bits++)
                {
                    // Check for authorization.  Handle unauthorized
                    // bitstreams to match the logic in disseminate(),
                    // i.e. "unauth=zero" means include a 0-length bitstream,
                    // "unauth=skip" means to ignore it (and exclude from
                    // manifest).
                    boolean auth = AuthorizeManager.authorizeActionBoolean(context,
                            bitstreams[bits], Constants.READ);
                    if (!auth)
                    {
                        if (unauth != null && unauth.equalsIgnoreCase("skip"))
                        {
                            continue;
                        }
                        else if (!(unauth != null && unauth.equalsIgnoreCase("zero")))
                        {
                            throw new AuthorizeException("Not authorized to read Bitstream, SID=" + String.valueOf(bitstreams[bits].getSequenceID()));
                        }
                    }

                    String sid = String.valueOf(bitstreams[bits].getSequenceID());
                    String fileID = bitstreamIDstart + sid;
                    edu.harvard.hul.ois.mets.File file = new edu.harvard.hul.ois.mets.File();
                    file.setID(fileID);
                    file.setSEQ(bitstreams[bits].getSequenceID());
                    fileGrp.getContent().add(file);

                    // set primary bitstream in structMap
                    if (bitstreams[bits].getID() == primaryBitstreamID)
                    {
                        Fptr fptr = new Fptr();
                        fptr.setFILEID(fileID);
                        div0.getContent().add(0, fptr);
                    }

                    // if this is content, add to structmap too:
                    if (isContentBundle)
                    {
                        div0.getContent().add(makeFileDiv(fileID, getObjectTypeString(bitstreams[bits])));
                    }

                    /*
                     * If we're in THUMBNAIL or TEXT bundles, the bitstream is
                     * extracted text or a thumbnail, so we use the name to work
                     * out which bitstream to be in the same group as
                     */
                    String groupID = "GROUP_" + bitstreamIDstart + sid;
                    if ((bundles[i].getName() != null)
                            && (bundles[i].getName().equals("THUMBNAIL") ||
                                bundles[i].getName().startsWith("TEXT")))
                    {
                        // Try and find the original bitstream, and chuck the
                        // derived bitstream in the same group
                        Bitstream original = findOriginalBitstream(item,
                                bitstreams[bits]);
                        if (original != null)
                        {
                                groupID = "GROUP_" + bitstreamIDstart
                                    + original.getSequenceID();
                        }
                    }
                    file.setGROUPID(groupID);
                    file.setMIMETYPE(bitstreams[bits].getFormat().getMIMEType());
                    file.setSIZE(auth ? bitstreams[bits].getSize() : 0);

                    // Translate checksum and type to METS
                    String csType = bitstreams[bits].getChecksumAlgorithm();
                    String cs = bitstreams[bits].getChecksum();
                    if (auth && cs != null && csType != null)
                    {
                        try
                        {
                            file.setCHECKSUMTYPE(Checksumtype.parse(csType));
                            file.setCHECKSUM(cs);
                        }
                        catch (MetsException e)
                        {
                            log.warn("Cannot set bitstream checksum type="+csType+" in METS.");
                        }
                    }

                    // FLocat: point to location of bitstream contents.
                    FLocat flocat = new FLocat();
                    flocat.setLOCTYPE(Loctype.URL);
                    flocat.setXlinkHref(makeBitstreamURL(bitstreams[bits], params));
                    file.getContent().add(flocat);

                    // technical metadata for bitstream
                    String techID = addAmdSec(context, bitstreams[bits], params, mets, extraStreams);
                    if (techID != null)
                    {
                        file.setADMID(techID);
                    }
                }
                fileSec.getContent().add(fileGrp);
            }
        }
        else if (dso.getType() == Constants.COLLECTION)
        {
            Collection collection = (Collection)dso;
            ItemIterator ii = collection.getItems();
            while (ii.hasNext())
            {
                //add a child <div> for each item in collection
                Item item = ii.next();
                Div childDiv = makeChildDiv(getObjectTypeString(item), item, params);
                if(childDiv!=null)
                {
                    div0.getContent().add(childDiv);
                }
            }

            // add metadata & info for Template Item, if exists
            Item templateItem = collection.getTemplateItem();
            if(templateItem!=null)
            {
                String templateDmdId[] = new String[dmdTypes.length];
                // index where we should add the first template item <dmdSec>.
                // Index = number of <dmdSecs> already added + number of <metsHdr> = # of dmdSecs + 1
                // (Note: in order to be a valid METS file, all dmdSecs must be before the 1st amdSec)
                int dmdIndex = dmdTypes.length + 1;
                //For each type of dmdSec specified,
                // add a new dmdSec which contains the Template Item metadata
                // (Note: Template Items are only metadata -- they have no content files)
                for (int i = 0; i < dmdTypes.length; ++i)
                {
                    MdSec templateDmdSec = makeMdSec(context, templateItem, DmdSec.class, dmdTypes[i], params, extraStreams);
                    if (templateDmdSec != null)
                    {
                        mets.getContent().add(dmdIndex, templateDmdSec);
                        dmdIndex++;
                        templateDmdId[i] = templateDmdSec.getID();
                    }
                }

                //Now add a child <div> in structMap to represent that Template Item
                Div templateItemDiv = new Div();
                templateItemDiv.setID(gensym("div"));
                templateItemDiv.setTYPE(getObjectTypeString(templateItem) + TEMPLATE_TYPE_SUFFIX);
                //Link up the dmdSec(s) for the Template Item to this <div>
                StringBuilder templateDmdIds = new StringBuilder();
                for (String currdmdId : templateDmdId)
                {
                    templateDmdIds.append(" ").append(currdmdId);
                }
                templateItemDiv.setDMDID(templateDmdIds.substring(1));
                //add this child <div> before the listing of normal Items
                div0.getContent().add(0, templateItemDiv);
            }

            // add link to Collection Logo, if one exists
            Bitstream logoBs = collection.getLogo();
            if (logoBs != null)
            {
                fileSec = new FileSec();
                addLogoBitstream(logoBs, fileSec, div0, params);
            }
        }
        else if (dso.getType() == Constants.COMMUNITY)
        {
            // Subcommunities are directly under "DSpace Object Contents" <div>,
            // but are labeled as Communities.
            Community subcomms[] = ((Community)dso).getSubcommunities();
            for (int i = 0; i < subcomms.length; ++i)
            {
                //add a child <div> for each subcommunity in this community
                Div childDiv = makeChildDiv(getObjectTypeString(subcomms[i]), subcomms[i], params);
                if(childDiv!=null)
                {
                    div0.getContent().add(childDiv);
                }
            }
            // Collections are also directly under "DSpace Object Contents" <div>,
            // but are labeled as Collections.
            Collection colls[] = ((Community)dso).getCollections();
            for (int i = 0; i < colls.length; ++i)
            {
                //add a child <div> for each collection in this community
                Div childDiv = makeChildDiv(getObjectTypeString(colls[i]), colls[i], params);
                if(childDiv!=null)
                {
                    div0.getContent().add(childDiv);
                }
            }
            //add Community logo bitstream
            Bitstream logoBs = ((Community)dso).getLogo();
            if (logoBs != null)
            {
                fileSec = new FileSec();
                addLogoBitstream(logoBs, fileSec, div0, params);
            }
        }
        else if (dso.getType() == Constants.SITE)
        {
            // This is a site-wide <structMap>, which just lists the top-level
            // communities.  Each top level community is referenced by a div.
            Community comms[] = Community.findAllTop(context);
            for (int i = 0; i < comms.length; ++i)
            {
                //add a child <div> for each top level community in this site
                Div childDiv = makeChildDiv(getObjectTypeString(comms[i]),
                        comms[i], params);
                if(childDiv!=null)
                {
                    div0.getContent().add(childDiv);
                }
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    }

    // create <div> element pointing to a file
    protected Div makeFileDiv(String fileID, String type)
    {
        Div div = new Div();
        div.setID(gensym("div"));
        div.setTYPE(type);
        Fptr fptr = new Fptr();
        fptr.setFILEID(fileID);
        div.getContent().add(fptr);
        return div;
    }
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    protected Div makeChildDiv(String type, DSpaceObject dso, PackageParameters params)
    {
        String handle = dso.getHandle();

        //start <div>
        Div div = new Div();
        div.setID(gensym("div"));
        div.setTYPE(type);
       
        //make sure we have a handle
        if (handle == null || handle.length()==0)
        {
            log.warn("METS Disseminator is skipping "+type+" without handle: " + dso.toString());
        }
        else
        {
            //create <mptr> with handle reference
            Mptr mptr = new Mptr();
            mptr.setID(gensym("mptr"));
            mptr.setLOCTYPE(Loctype.HANDLE);
            mptr.setXlinkHref(handle);
            div.getContent().add(mptr);
        }

        //determine file extension of child references,
        //based on whether we are exporting just a manifest or a full Zip pkg
        String childFileExtension  = (params.getBooleanProperty("manifestOnly", false)) ? "xml" : "zip";

        // Always create <mptr> with file-name reference to child package
        // This is what DSpace will expect the child package to be named during ingestion
        // (NOTE: without this reference, DSpace will be unable to restore any child objects during ingestion)
        Mptr mptr2 = new Mptr();
        mptr2.setID(gensym("mptr"));
        mptr2.setLOCTYPE(Loctype.URL);
        //we get the name of the child package from the Packager -- as it is what will actually create this child pkg file
        mptr2.setXlinkHref(PackageUtils.getPackageName(dso, childFileExtension));
        div.getContent().add(mptr2);

        return div;
    }
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            // add a structMap to contain div pointing to parent:
            StructMap structMap = new StructMap();
            structMap.setID(gensym("struct"));
            structMap.setTYPE("LOGICAL");
            structMap.setLABEL("Parent");
            Div div0 = new Div();
            div0.setID(gensym("div"));
            div0.setTYPE(PARENT_DIV_TYPE);
            div0.setLABEL("Parent of this DSpace Object");
            Mptr mptr = new Mptr();
            mptr.setID(gensym("mptr"));
            mptr.setLOCTYPE(Loctype.HANDLE);
            mptr.setXlinkHref(parentHandle);
            div0.getContent().add(mptr);
            structMap.getContent().add(div0);
            mets.getContent().add(structMap);
        }
    }
View Full Code Here

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