Examples of com.googlecode.gaal.analysis.api.IntervalSetBuilder

Package com.googlecode.gaal.analysis.api

Examples of com.googlecode.gaal.analysis.api.IntervalSetBuilder

com.googlecode.gaal.analysis.api.IntervalSetBuilder

        int srcDepth = 1;
        int srcMaxDepth = -1;
        int dstDepth = 0;
        int dstMaxDepth = -1;
        Analyser analyser = new Analyser(srcCorpus, dstCorpus);
        IntervalSetBuilder intervalSetBuilder = new NonSingletonBwtSetBuilder();
        // IntervalSetBuilder intervalSetBuilder = new
        // ProperIntervalSetBuilder();
        analyser.printRecursiveAlignments(intervalSetBuilder, minLeftRightContextRatio, minNonEmptyFillerCount,
                minSimilarity, alignmentsNumber, minVectorSize, windowSize, srcDepth, srcMaxDepth, dstDepth,
                dstMaxDepth);

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    }


    public static void simpleTest() {
        int windowSize = 9;
        Analyser analyser = new Analyser(CorpusTest.createMiningEngineeringCorpus(), null);
        IntervalSetBuilder intervalSetBuilder = new NonSingletonBwtSetBuilder();
        analyser.printSrcContexts(intervalSetBuilder, " ", windowSize);
    }

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            IntervalSetBuilder intervalSetBuilder, Filter<EmbeddedInterval> contextFilter, int windowSize) {
        return new EmbeddedContextExtractor(lst, corpus, intervalSetBuilder, contextFilter, windowSize);
    }


    public void printIntervalAlignments(double minSimilarity, int alignmentsNumber, int minVectorSize) {
        IntervalSetBuilder intervalSetBuilder = new ProperIntervalSetBuilder();
        Aligner<BinaryInterval> aligner = getAligner(new IntervalVectorBuilder<BinaryInterval>(), intervalSetBuilder
                .buildIntervalSet(srcLST).iterator(), intervalSetBuilder.buildIntervalSet(dstLST).iterator(),
                srcCorpus, dstCorpus, minSimilarity, alignmentsNumber, minVectorSize);
        for (AlignmentQueue<BinaryInterval> queue : aligner) {
            for (AlignmentQueue<BinaryInterval>.Alignment alignment : queue) {
                print(alignment, false);
            }

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                }
                int minVectorSize = 0;
                if (line.hasOption("vsize")) {
                    minVectorSize = Integer.parseInt(line.getOptionValue("vsize"));
                }
                IntervalSetBuilder intervalSetBuilder = null;
                if (line.hasOption("max")) {
                    intervalSetBuilder = new NonSingletonBwtSetBuilder();
                } else if (line.hasOption("smax")) {
                    intervalSetBuilder = new SupermaximalSetBuilder();
                } else {
                    intervalSetBuilder = new ProperIntervalSetBuilder();
                }
                if (line.hasOption('v')) {
                    System.out.println("alignment options:");
                    System.out.printf("minimal similarity : %f\n", minSimilarity);
                    System.out.printf("alignments number: %d\n", alignmentsNumber);
                    System.out.printf("minimal vector size: %d\n", minVectorSize);
                    System.out.print("outputing ");
                    if (intervalSetBuilder instanceof NonSingletonBwtSetBuilder) {
                        System.out.print("maximal");
                    } else if (intervalSetBuilder instanceof SupermaximalSetBuilder) {
                        System.out.print("supermaximal");
                    } else if (intervalSetBuilder instanceof ProperIntervalSetBuilder) {
                        System.out.print("all the");
                    }
                    System.out.println(" repeats");
                }
                boolean asLaTeX = false;
                if (line.hasOption('x')) {
                    asLaTeX = true;
                }
                getAnalyser(line.getOptionValue('s'), line.getOptionValue('t'), corpusSize, regex, srcStopWords,
                        dstStopWords, srcSeparators, dstSeparators).printRecursiveAlignments(intervalSetBuilder,
                        minLeftRightContextRatio, minNonEmptyFillerCount, minSimilarity, alignmentsNumber,
                        minVectorSize, windowSize, srcDepth, srcMaxDepth, dstDepth, dstMaxDepth, asLaTeX);


            } else if (line.hasOption('s')
                    && (line.hasOption('i') || line.hasOption('r') || line.hasOption('u') || line.hasOption('z'))) {


                if (line.hasOption('i')) {
                    getAnalyser(line.getOptionValue('s'), null, corpusSize, regex, srcStopWords, dstStopWords,
                            srcSeparators, dstSeparators).printSrcCorpusInfo();
                }
                if (line.hasOption('r')) {
                    IntervalSetBuilder intervalSetBuilder = null;
                    if (line.hasOption("max")) {
                        intervalSetBuilder = new NonSingletonBwtSetBuilder();
                    } else if (line.hasOption("smax")) {
                        intervalSetBuilder = new SupermaximalSetBuilder();
                    } else {

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Related Classes of com.googlecode.gaal.analysis.api.IntervalSetBuilder

com.googlecode.gaal.analysis.impl.Analyser

com.googlecode.gaal.cli.Main

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