Package com.google.cloud.genomics.api.client.commands

Examples of com.google.cloud.genomics.api.client.commands.BaseCommand


    try {
      // Parse the command line
      cmdLine.setArgs(args);

      // Authorization
      BaseCommand command = cmdLine.getCommand();
      List<String> scopes = command.getScopes();
      VerificationCodeReceiver receiver = command.noLocalServer ? new GooglePromptReceiver() :
          new LocalServerReceiver();

      GenomicsFactory genomicsFactory = GenomicsFactory.builder("genomics_java_client")
          .setScopes(scopes)
          .setUserName("user" + scopes.toString())
          .setVerificationCodeReceiver(Suppliers.ofInstance(receiver))
          .setRootUrl(command.rootUrl)
          .setServicePath("/")
          .build();

      File clientSecrets = new File(command.clientSecretsFilename);
      if (!clientSecrets.exists()) {
        System.err.println(
            "Client secrets file " + command.clientSecretsFilename + " does not exist."
            + " Visit https://developers.google.com/genomics to learn how"
            + " to install a client_secrets.json file.  If you have installed a client_secrets.json"
            + " in a specific location, use --client_secrets_filename <path>/client_secrets.json.");
        return;
      }

      File dataStoreFile = new File(System.getProperty("user.home"), ".store/genomics_java_client");
      command.setDataStoreFactory(new ReadableFileDataStoreFactory(dataStoreFile));
      command.handleRequest(genomicsFactory.fromClientSecretsFile(clientSecrets));

    } catch (IllegalArgumentException | ParameterException e) {
      cmdLine.printHelp(e.getMessage() + "\n", System.out);
    } catch (GoogleJsonResponseException e) {
      System.out.println("API request failed: " + BaseCommand.getErrorMessage(e));
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Related Classes of com.google.cloud.genomics.api.client.commands.BaseCommand

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