Package com.compomics.util.messages

Examples of com.compomics.util.messages.FeedBack


                spectrumCountingPreferences, sequenceMatchingPreferences, false);

        // show the warnings
        Iterator<String> iterator = peptideShaker.getWarnings().keySet().iterator();
        while (iterator.hasNext()) {
            FeedBack warning = peptideShaker.getWarnings().get(iterator.next());
            if (warning.getType() == FeedBack.FeedBackType.WARNING) {
                System.out.println(warning.getMessage()); // @TODO: better interaction between notes and feedback objetcs...
            }
        }

        if (!waitingHandler.isRunCanceled()) {
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                // show the warnings
                Iterator<String> iterator = peptideShaker.getWarnings().keySet().iterator();
                int counter = 0;
                while (iterator.hasNext()) {
                    FeedBack warning = peptideShaker.getWarnings().get(iterator.next());
                    if (warning.getType() == FeedBack.FeedBackType.WARNING) {
                        peptideShakerGUI.addNote("<b>" + ++counter + " " + warning.getTitle() + "</b><br><br>" + warning.getMessage()); // @TODO: better interaction between notes and feedback objetcs...
                    }
                }

                peptideShakerGUI.setProcessingPreferences(processingPreferences);
                peptideShakerGUI.setPtmScoringPreferences(ptmScoringPreferences);
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