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toBeMerged = new ArrayList<NodeMerge>(); rulesNotApplied = true; if( PelletOptions.TRACK_BRANCH_EFFECTS ) { branchEffects = new SimpleBranchEffectTracker(); } else { branchEffects = null; }
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if( PelletOptions.TRACK_BRANCH_EFFECTS ) { if( copyIndividuals ) { branchEffects = abox.branchEffects.copy(); } else { branchEffects = new SimpleBranchEffectTracker(); } } else { branchEffects = null; }