Package LONI.visitor

Examples of LONI.visitor.LoniToGalaxyConverter

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    // TODO Auto-generated method stub
    System.out.println("==="+path+"===");
    Pipeline p;
    try {
      p = LoniSpecification.getXMLParser().parse(new File(path));
      LoniToGalaxyConverter lgc = new LoniToGalaxyConverter();
      Workflow workflow = (Workflow) lgc.visit(p);
     
      try {
        GalaxySpecification.getJSONGenerator().generate(workflow, output);
        GalaxySpecification.getDatabase().dumpDatabase();
        GalaxySpecification.getDatabase().clear();
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  public static void LoniToGalaxy(String path, String output){
    System.out.println(path);
    System.out.println("> "+output);
    Pipeline P;
    try {
      LoniToGalaxyConverter glc;
      glc = new LoniToGalaxyConverter();
     
      P = LoniSpecification.getXMLParser().parse(new File(path));
      Workflow W = (Workflow) glc.visit(P);
     
      try {
        GalaxySpecification.getJSONGenerator().generate(W, output);
      } catch (IOException e) {
        // TODO Auto-generated catch block
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Related Classes of LONI.visitor.LoniToGalaxyConverter

  • Galaxy.Tree.Workflow.InputConnection
  • Galaxy.Tree.Workflow.Workflow
  • LONI.tree.GraphObject.ModuleGroup
  • LONI.tree.workflow.Connections
  • LONI.visitor.util.GalaxyContext
  • Test.ChrisTestSpecifications
  • Test.GalaxyTestSuite
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